Installation and Usage — pySCENIC latest documentationhttps://pyscenic.readthedocs.io/en/latest/installation.html#installation 

Development

You can also install the bleeding edge (i.e. less stable) version of the package directly from the source:

git clone https://github.com/aertslab/pySCENIC.git
cd pySCENIC/
pip install .

Pin numpy until np.object is not used anymore by pcm32 · Pull Request #478 · aertslab/pySCENIC (github.com)https://github.com/aertslab/pySCENIC/pull/478

重新安装Numpy 1.23.5即可

Pining to Numpy 1.23.5 seems to get rid of this, leaving me again in the dask issues, but that is a different story.

conda install mamba  -y -c conda-forge -c bioconda
mamba install loompy -y -c conda-forge -c bioconda
pip install -U loompy -i  https://pypi.douban.com/simple/
mamba install scanpy -c conda-forge -c bioconda -y

pip install pyscenic  -i  https://pypi.douban.com/simple/
pip install --upgrade numpy -i  https://pypi.douban.com/simple/


pip install numpy==1.7 -i  https://pypi.douban.com/simple/